cuikbiominimize.c
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void InitBioWorld(Tparameters *p, char *filename, unsigned int maxAtomsLink, double **conformation, TBioWorld *bw) Initializes a world form a biomolecule. Definition: bioworld.c:1394 Definition of the combination of an atlas with a RRT. Definition of basic functions. double BioWorldEnergy(Tparameters *p, boolean simp, double *conformation, void *bw) Computes the energy of a given configuration. Definition: bioworld.c:1896 Data structure to hold the information about the name of a file. Definition: filename.h:248 Definition of the Tfilename type and the associated functions. boolean MinimizeOnAtlas(Tparameters *pr, char *fname, double *p, TAtlasBase *w, double(*costF)(Tparameters *, boolean, double *, void *), void *costData, Tatlas *a) Gradient minimization on an manifold. Definition: atlas.c:3106 Error and warning functions. int main(int argc, char **arg) Main body of the cuikbiominimize application. Definition: cuikbiominimize.c:84 Definitions of constants and macros used in several parts of the cuik library. Auxiliary functions to deal averages of path planner executions. A table of parameters. void CreateFileName(char *path, char *name, char *suffix, char *ext, Tfilename *fn) Constructor. Definition: filename.c:22 A bridge between world structures and biological information. void InitParametersFromFile(char *file, Tparameters *p) Constructor from a file. Definition: parameters.c:51 Definition of a local chart on a manifold. char * GetFileFullName(Tfilename *fn) Gets the file full name (paht+name+extension). Definition: filename.c:151 #define NO_UINT Used to denote an identifier that has not been initialized. Definition: defines.h:435 void SaveAtlas(Tparameters *pr, Tfilename *fname, Tatlas *a) Stores the atlas information on a file. Definition: atlas.c:3842 Auxiliary functions to deal with sets of samples. #define CS_WD_FROM_WORLD(ptr, wcs) Initializes the equations from a world structure. Definition: wcs.h:108 Definition of basic randomization functions. Definition of the Tparameters type and the associated functions. Tworld * BioWorldWorld(TBioWorld *bw) Returns a pointer to the world generated from the bio-information. Definition: bioworld.c:1802 unsigned int ReadOneSample(Tparameters *p, char *fname, unsigned int nvs, double **s) Reads one sample from a file. Definition: samples.c:1216 |
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